Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO... - SRA

SRX482640: Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO-469' containing sample 'Klebsiella pneumoniae BIDMC 16'
3 PACBIO_SMRT (PacBio RS) runs: 245,223 spots, 908M bases, 3.3Gb downloads

UUID: d3f5bdbe-e453-41a0-a279-104d3cab2491

Design: Pacbio sequencing of Klebsiella pneumoniae BIDMC 16 via random selection

Submitted by: Broad Institute (BI)

Study: Carbapenem Resistance

PRJNA202020 • SRP022661 • All experiments • All runs

Sample: Generic sample from Klebsiella pneumoniae BIDMC 16

SAMN02138639 • SRS420819 • All experiments • All runs

Organism: Klebsiella pneumoniae BIDMC 16

Library:

Name: PACBIO-469

Instrument: PacBio RS

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Spot descriptor:

1 forward

Experiment attributes: (show all 17 attributes...) (hide...)

analysis_type: None

gssr_id: 309963.0

lsid: broadinstitute.org:bsp.prod.sample:47HUH

material_type: DNA:DNA Somatic

pacbio_rs_binding_kit: DNA/Polymerase Binding Kit XL 1.0

pacbio_rs_binding_kit_barcode: 001543100150800032813

pacbio_rs_template_prep_kit: DNA Template Prep Kit 2.0 (3Kb - 10Kb)

pacbio_rs_template_prep_kit_barcodes: 001400001540835042313, 002550001540835032514

product_order: PDO-678

project: G33327

root_sample_id: SM-3WL47

sample_id: SM-47HUH

sequencing_protocol: Standard

template_preparation_adaptor_sequence: ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT

template_preparation_kit_insert_size: 8700

used_binding_kit_control: false

work_request: 36056

Pipeline: show...hide...

Name	Step	Program	Version
2013-08-07 16:55:53.0	Instrument Control Version	1.3.3.1.116585
base caller	2013-08-08 10:33:46.0	Primary Analysis	[email protected]:8082, SwVer=1331.116585, HwVer=1.0

Runs: 3 runs, 245,223 spots, 908M bases, 3.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR1185225	81,741	332.9M	1.2Gb	2014-03-06
SRR1185230	81,741	292.6M	1.1Gb	2014-03-06
SRR1185296	81,741	282.5M	1Gb	2014-03-07

ID:: 672713

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